Academic Activity
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Title:Fungal small RNAs hijack host RNAi machinery to suppress host innate immunity
发表时间:2013-09-22 阅读次数:2659次

Lecturer: Hailing Jin

 

Professor

Department of Plant Pathology and Microbiology,

Center for Plant Cell Biology (CEPCEB),

Institute for Integrative Genome Biology,

University of California, Riverside, CA 92521

Phone: 951-8277995;

Fax: 951-8274294;

Email: hailingj@ucr.edu

 

Professional Experience

03/2013-Present         Professor, University of California, Riverside

07/2009-02/2013        Associate Professor, University of California, Riverside

08/2004-06/2009        Assistant Professor, University of California, Riverside

2000-2004    Specialist, Plant Gene Expression Center, UC Berkeley         

1996-1999             Postdoctoral Fellow, John Innes Center, UK

 

Education

B.Sc.   1991: Genetics, Wuhan University, China

Ph.D. 1996: Molecular Genetics, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences

 

Grants and Awards

NIH R01 Award, 2010-2015

CDFA Specialty Crop Award, 2012-2015

NSF Career Award, 2007-2013

Awards from California Citrus Research Board, every year during 2006-2013

UCR-LANL Collaborative Award, 2008-2009

UC Discovery Award, 2006-2009

Interdisciplinary Research Award, Institute for Integrative Genome Biology, UCR, 2007-2008

Hatch/AES-USDA award 2006-2015

Academic Senate Omnibus Research Award, 2005, 2007, 2009

Regents’ Faculty Development Award, 2004, 2006

NSF Travel Award, Keystone Symposia, 2002

EMBO Fellowship, European Molecular Biology Organization, 1999

Excellent Performance Award, John Innes Center, Biotechnology and Biological Sciences Research Council, UK, 1997

Beckman Excellent Ph.D. Dissertation Award, Beckman Instruments, Inc., China Office, 1995

Outstanding Graduate Student Award, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, 1992 and 1995

             

Invited Oral Presentations

1.    Invited talk at the Cold Spring Harbor meeting on Plant Epigenetics, Stress and Evolution, 2012.

2.    Invited plenary talk at the First International Symposium on Plant-Microbe Interaction in Cereal Crops, China, 2012

3.    Invited talk at the Medical School, Keio University, Tokyo, Japan, 2012

4.    Invited talk at National Taiwan University, Taiwan, 2012

5.    Invited talk at the Institute of Plant and Microbial Biology, Academia Sinica, Taiwan, 2012

6.    Invited speaker for the Summer Course on Plant Molecular Biology in Peking University, Beijing and Fudan University, Shanghai, 2012

7.    Invited talk at Texas A&M University, 2012

8.    Invited talk at University of British Columbia, Canada, 2012

9.    Invited talk at Cornell University, 2012

10.  Invited talk at University of Missouri, 2012

11.  Invited talk at the Second International Conference on Biotic Plant Interactions, China, 2011.

12.  Invited talk at the Department of Colorado State University, Fort Collins, CO, 2011

13.  Invited talk at the 9th Biannual Conference of Chinese Biology Investigators Society (CBIS), China, 2011.

14.  Invited talk at the Institute of Genetics and Development, CAS, China, 2011

15.  Invited talk at The First Beijing International Symposium on Molecular Plant Pathology, China, 2011

16.  Invited talk at Nanjing Agriculture University, China, 2011

17.  Invited talk at Shanghai Jiaotong University, China, 2011

18.  Invited talk at Shanghai Institute of Plant Physiology and Ecology, 2011

19.  Invited talk at National Center for Gene Research, CAS, 2011

20.  Invited talk at California State University, Fullerton, 2011.

21.  Invited talk at the Department of Biochemistry, University of California, Riverside, 2011

22.  Invited talk at the Keystone Symposium “Mechanism and Biology of Silencing”, Monterey, 2011.

23.  Invited talk at the Biochemistry Department, Oklahoma State University, Oklahoma, 2011.

24.  Invited talk at the 9th Citrus Genomics Workshop, CA, 2010.

25.  Invited talk at University of California, Davis, 2010

26.  Invited talk at Fujian Agriculture and Forestry University, 2010

27.  Invited plenary talk at International Symposium of Plant Pathology and Disease Resistance, Xi’an, China, 2010

28.  Invited Talk at College of Life Sciences, Shanghai Jiao Tong University, 2010

29.  Invited plenary talk at the Eighth International Conference on "the Frontiers of Plant Biology: Cells and Signals", China, 2010

30.  Invited talk at Section of Trait Research & Technologies, Syngenta Biotechnology Co., Ltd., 2010

31.  Invited talk at Tsinghua University, China, 2010

32.  Invited talk at National Institute of Biological Sciences, China, 2010

33.  Invited talk at University of Cambridge, UK, 2010

34.  Invited talk at Institut de Biologie de l'ENS (IBENS), France, 2010

35.  Invited talk at the 20th IPGSA Conference. Spain, 2010

36.  Invited talk at Institut des Sciences Végétales CNRS, France, 2010

37.  Invited talk at Institute of Botany, Chinese Academy of Sciences, China, 2010

38.  Invited talk at Peking University, China, 2010

39.  Invited plenary talk at an International Mini Symposium of Bacterial Biology, Shanghai Jiao Tong University, China, 2010

40.  Invited talk at the Mini-Symposium of Epigenetics, China, 2010

41.  Keynote speaker, at the International Symposium of Biological Control of Plant Diseases. China, 2010

42.  Invited talk at Nanjing Agriculture University, China, 2010

43.  Invited talk at the First Plant RNAi Keystone symposium, Santa Fe, New Mexico, 2010

44.  Invited talk at Frontiers in Biological Sciences, CBIS Conference, San Diego, 2009

45.  Illumina Deep sequencing Workshop, UCR, 2009.

46.  Keynote Speaker, Symposium of Plant Epigenetics in Stress Responses. Pisa, Italy, 2009.

47.  Invited Speaker, Small RNA in Plant Defense Workshop, University of Pisa, Italy, 2009.

48.  Invited talk at the APS Annual Meeting, Portland, Oregan, 2009.

49.  Invited Plenary talk at XIV International Congress on Molecular Plant-Microbial Interactions, Quebec City, 2009.

50.  Invited talk at CTV (Citrus Tristeza Virus) workshop, Emeryville, California, 2008.

51.  Invited talk at San Diego Center for Molecular Agriculture, University of California, San Diego, 2008.

52.  Invited talk at LANL-UCR Collaborative Program in Infectious Disease Meeting, UCR, 2008.

53.  Invited talk at the Department of Plant Sciences, University of Arizona, 2008.

54.  Invited one-day lecture in “RNA silencing: Mechanisms, Biology and Applications” Summer Workshop and one seminar in China Agricultural University (CAU), Beijing, 2007.

55.  Invited talk at Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 2007.

56.  Invited talk at Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, 2007.

57.  Invited talk at the XV International Plant and Animal Genome Conference, 2007.

58.  Invited talk at the UCR 24th Symposium in Plant Biology: Gene Silencing: The Biology of Small RNAs and the Epigenome, 2007.

59.  Invited talk at the Department of Plant Pathology, University of California, Davis, 2006.

60.  Invited talk at Plant Molecular Biology Gordon Conference, New Hampshire, 2006.

61.  Invited talk at the XII International Congress on Molecular Plant-Microbial Interactions. Cancun, Maxico, 2005.

62-66. Invited talks at Genetics Genomics and Bioinformatics seminar series (2005,2008), Plant Pathology and Microbiology seminar series (2007) and Botany and Plant Sciences seminar series (2006) at UCR.      

67-71. Invited talks for the CEPCEB REU workshop and summer research program (each summer of 2005-2009).

 

Editorial board member: Senior Editor of Journal of Plant Science and Molecular Breeding; Review Editor of Frontiers in Plant-Microbe Interaction.

 

Review Panels:

NIH Study Section, Spring 2012

NSF IOS, SDS panel, Fall 2010

National Science Foundation of China, Plant Biology Panel, 2010

NSF MCB panel: Fall of 2007, Fall 2009.

Invited to the NSF MCB panel in Fall of 2008 and Spring 2010 but declined due to teaching.

Invited to the USDA Panel of Plant Biology for 2009, but the panel was canceled due to USDA reorganization.

Invited to the USDA panel of Biology of Plant associated Microorganisms for 2005 but declined due to conflict of interest (I submitted a proposal to the same panel that year).

Panel member of Lindcove Research and Extension Center, University of California 2006-2010

Ad-hoc reviewer for NSF grants (IOB and MCB clusters), NIFA USDA, BARD proposals, GENOSCOPE proposal-Centre national de séquençage in France, United States-Israel binational science foundation (BSF) and New Zealand Foundation for Research, Science and Technology (NERF).

 

Teaching

Undergraduate course: 1. Molecular Biology (Bio107A, taught 100% every year).

                    2. Freshman advisory course (NASC093, 100%, 2008)

Graduate courses: 1. Molecular Plant-Microbe Interaction (PLPA230, taught 60% every other year).

                2. A colloquium on the principles of plant pathology (PLPA265, Coordinated the course and taught 10% in 2006, 10% in 2011).

Seminar series organized:

1.    GGB-CMDB-Microbiology Joint Seminar Series (2012-2013)

2.    CEPCEB Seminar Series (2010)

3.    Cell, Molecular and Developmental Biology seminar series (CMDB257, 2008, 2009).

4.    Plant Pathology seminar series (PLPA250, 2006, 2008).

5.    Genetics Genomics and Bioinformatics (GGB) seminar series (BIO261, 2005).

Summer training programs organized: Summer training program on Plant Molecular Biology and Gene Silencing in 2008-2011 (Part of the Career Award). Co-organized the NSF REU training program in summer 2006, and participated in NSF REU training program in 2005, 2007, 2008, 2010.

Co-organized the Annual Career Day event of the Institute for Integrative Genome Biology at UCR in 2011 and 2012 and took part in the CNAS Discover Day.

 

Publications

1.    Zhang X, Xia J, Lii Y, Barrera-Figueroa B, Zhou X, Gao S, Lu L, Niu D, Liang W, Chen Z, Leung C, Wong T, H. Zhang, Guo J, Li Y, Liu R, Zhu JK, Zhang W*, Jin H*: Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function. Genome Biol. 2012, 13 (3): R20.

Impact Factor: 9.04

2.    Li W, Cui X, Meng Z, Huang X, Xie Q, Wu H, Jin H, Zhang D, Liang W: Transcriptional regulation of Arabidopsis MIR168a and ARGONAUTE1 homeostasis in ABA and abiotic stress responses. Plant Physiol. 2012, 158 (3):1279-92.

    Impact Factor: 7.05

3.    Barrera-Figueroa BE, Gao L, Wu Z, Zhou X, Zhu J, Jin H, Liu R, Zhu JK. High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice. BMC Plant Biol. 2012, 12(1):132.

Impact Factor: 3.45

4.    Xiaoming Zhang, Hongwei Zhao, Shang Gao, Wei-Chi Wang, Surekha Katiyar-Agarwal, Hsien-Da Huang, Natasha Raikhel and Hailing Jin*: Arabidopsis Argonaute 2 regulates innate immunity via miRNA393*-mediated silencing of a Golgi-localized SNARE gene MEMB12. Molecular Cell 2011, 42, 356-366.

Impact Factor: 14.18

5.   Panagiotis F. Sarris, Shang Gao, Konstantinos Karademiris, Hailing Jin, Kriton Kalantidis and Nickolas J. Panopoulos: Phytobacterial Type III Effectors HopX1, HopAB1 and HopF2 Enhance Sense-Post Transcriptional Gene Silencing Independently of Plant R Gene-Effector Recognition. Mol Plant Microbe Interact. 2011, DOI: 10.1094/MPMI-01-11-0010.

    Impact Factor: 4.431

6.    Weixiong Zhang*, Shang Gao, Xiang Zhou, Padmanabhan Chellappan, Zheng Chen, Xuefeng, Zhou, Xiaoming Zhang, Nyssa Fromuth, Gabriela Coutino, Michael Coffey, and Hailing Jin*: Bacterial-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks. Plant Molecular Biology 2011, 75, 93-105.

 Impact Factor: 4.15

7.    Niu DD, Liu HX, Jiang CH, Wang YP, Wang QY, Jin H, Guo J. The Plant Growth-Promoting Rhizobacterium Bacillus cereus AR156 Induces Systemic Resistance in Arabidopsis thaliana by Simultaneously Activating Salicylate- and Jasmonate/Ethylene-dependent Signaling Pathways. Mol Plant Microbe Interact. 2011, 24, 533-42.

    Impact Factor: 4.431

8.    Shang Gao and Hailing Jin*: Host small RNAs and plant innate immunity. Non Coding RNAs in Plants, RNA Technologies, 2011, DOI 10.1007/978-3-642-19454-2_2.

9.    Zhang W*, Gao S, Zhou X, Xia J, Chellappan P, Zhou X, Zhang X, Jin H.*: Multiple distinct small RNAs originated from the same microRNA precursors. Genome Biol. 2010, 11, R81.

     Impact Factor: 9.04

10.  Padmanabhan Chellappan, Jing Xia, Xuefeng Zhou, Shang Gao, Xiaoming Zhang, Gabriela Coutino, Franck Vazquez, Weixiong Zhang and Hailing Jin*: siRNAs from miRNA sites mediate DNA methylation of target genes. Nucleic Acid Research, 2010, 38, 6883-94.

    Impact Factor: 8.03

11.  Hailing Jin & Jian-Kang Zhu: A viral suppressor protein inhibits host RNA silencing by hooking up with Argonautes. Genes & Development, 2010, 24, 853-856.

    Impact Factor: 14.198

12.  Hailing Jin* & Jian-Kang Zhu*: How many ways are there to generate small RNAs? Molecular Cell, 2010, 38, 775-777.

    Impact Factor: 14.18

13.  Surekha Katiyar-Agarwal and Hailing Jin*: Role of Small RNAs in host-microbe interactions. Annu. Rev. Phytopathol. 2010, 48, 225-246.

    Impact Factor: 9.875

14.  Zhihuan Gao, Hai-Liang Liu, Lucia Daxinger, Olga Pontes, Xinjian He, Weiqiang Qian, Mingtang Xie, Zdravko J. Lorkovic, Shoudong Zhang, Dominique Pontier, Thierry Lagrange, Steven E. Jacobsen, Hailing Jin, Antonius J.M. Matzke, Marjori Matzke, Craig S. Pikaard, and Jian-Kang Zhu: An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature, 2010, 465, 106-110.

Impact factor: 36.28

15.  Agee AE, Surpin M, Sohn EJ, Girke T, Rosado A, Kram BW, Carter C, Wentzell AM, Kliebenstein DJ, Jin HC, Park OK, Jin H, Hicks GR, Raikhel NV: MODIFIED VACUOLE PHENOTYPE1 is an Arabidopsis myrosinase-associated protein involved in endomembrane protein trafficking. Plant Physiol., 2010, 152, 120-32.

    Impact Factor: 7.05

16.  Atsunari Tsuchisaka, Guixia Yu, Hailing Jin, Jose M. Alonso, Joseph R. Ecker, Xiaoming Zhang, Shang Gao and Athanasios Theologis: A Combinatorial Interplay Among the 1-Aminocyclopropane-1-carboxylate Isoforms Regulates Ethylene Biosynthesis in Arabidopsis thaliana. Genetics, 2009, 183, 979-1003.

    Impact Factor: 4.001

17.  Padmanabhan Chellappan, Xiaoming Zhang and Hailing Jin*: Host small RNAs are big contributors in plant innate immunity. Current Opinion in Plant Biology, 2009, 12, 465-72.

     Impact factor: 9.27

18.  He XJ, Hsu YF, Zhu S, Wierzbicki AT, Pontes O, Pikaard CS, Liu HL, Wang CS, Jin H, Zhu JK. An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein. Cell 2009,137, 498-508.

Impact factor: 32.4

19.  Iida K, Jin H, Zhu, JK. Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana. BMC Genomics 2009, 10:155.

    Impact factor: 4.07

20.  Xuefeng Zhou, Ramanjulu Sunkar, Hailing Jin, Jian-Kang Zhu and Weixiong Zhang: Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. Genome Research, 2009, 19, 70-78.

Impact Factor: 13.6

21.  Ni Li, Carolyn Jablonowski, Hailing Jin and Wenwan Zhong: Stand-Alone Rolling Circle Amplification Combined with Capillary Electrophoresis for Specific Detection of Small RNA. Analytical Chemistry 2009. 81, 4906-13.

    Impact factor: 5.856

22.  Hailing Jin* (co-corresponding author), Vladimir Vacic, Thomas Girke, Stefano Lonardi and Jian-Kang Zhu*: Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis. BMC Molecular Biology, 2008, 9:6.

Impact factor: 2.86

23.  Hailing Jin*: Endogenous Small RNAs And Antibacterial Immunity in Plants. FEBS Letters, 2008, 582, 2679-84.

     Impact factor: 3.538

24.  Wen-Xue Li, Youko Oono, Jianhua Zhu, Xin-Jian He, Jian-Min Wu, Iida Kei, Xiao-Yan Lu, Xinping Cui, Hailing Jin and Jian-Kang Zhu: Transcriptional and posttranscriptional regulation of a transcription factor important for drought resistance in Arabidopsis. Plant Cell, 2008, 20, 2238-51.

Impact factor: 8.987

25.  Surekha Katiyar-Agarwal, Shang Gao, Adam Vivian-Smith and Hailing Jin*: A novel class of bacteria-induced small RNAs in Arabidopsis. Genes & Development 2007, 21, 3123-3134.

    Impact Factor: 14.198

26.  Vladimir Vacic, Hailing Jin, Jian-Kang Zhu and Stefano Lonard: A probabilistic method for small RNA flowgram matching. Pacific Symposium on Biocomputing, 2008, 13, 75-86.

27.  Katiyar-Agarwal S, Morgan R, Dahlbeck D, Borsani O, Villegas A Jr, Zhu JK, Staskawicz B*, Jin H.* 2006. A pathogen-inducible endogenous siRNA in plant immunity. Proc. Natl. Acad. Sci. USA 103: 1802-18007.

Impact Factor: 9.68

28.  Kim Baumann, Maria Perez-Rodriguez, Desmond Bradley, Julien Venail, Paul Bailey, Hailing Jin, Ronald Koes, Keith Roberts and Cathie Martin: Control of cell and petal morphogenesis by R2R3 MYB transcription factors. Development 2007, 134, 1691-1701.

29.  Hailing Jin*, Songtao Li and Andy Villegas Jr.: Down Regulation of 26S Proteasome Subunit RPN9 Inhibits Viral Systemic Transport and Alters Plant Vascular Development. Plant Physiology, 2006, 142, 651-661.

30.  Rojo E, M.R., Carter C, Zouhar J, Pan S, Plotnikova J, Jin H, Paneque M, Sanchez-Serrano JJ, Baker B, Ausubel FM, Raikhel NV. VPEgamma Exhibits a Caspase-like Activity that Contributes to Defense against Pathogens. Current Biology, 2004, 14, 1897-906.

Impact factor: 10.88

31.  Gianinna Brigneti, Ana M. Martín-Hernández, Hailing Jin, Judy Chen, David C. Baulcombe, Barbara Baker and Jonathan D.G. Jones. Virus-Induced Gene Silencing in Solanum Species. The Plant Journal. 2004, 39, 264-272.

32.  Ronning, C.M., S. Stegalkina, R. Ascenzi, O. Bougri, A. Hart, T. Utterbach, S. Vanaken, S.,  Riedmuller, J. White, J. Cho, G. Pertea, Y. Lee, S. Karamycheva, R. Sultana, J. Tsai, J. Quackenbush, K. Myers, S. Restrepo, C. Smart, W. Fry, R. van der Hoeven, S. Tanksley, P. Zhang, H. Jin, M. Yamamoto, B. Baker, and C.R. Buell. Comparative Analyses of Potato Expressed Sequence Tag Libraries. Plant Physiology 2003, 131, 419-429.

33.  Jin, H., M.J. Axtell, D. Dahlbeck, O. Ekwenna, S. Zhang, B. Staskawicz, and B. Baker: NPK1, an MEKK1-like mitogen-activated protein kinase kinase kinase, regulates innate immunity and development in plants. Developmental Cell 2002, 3, 291-297.

    Impact factor: 14.03

34.  Cathie Martin, Kiran Bhatt, Kim Baumann, Hailing Jin, Sabine Zachgo, Keith Roberts, Zsuzsanna Schwarz-Sommer, Beverley Glover and Maria Perez-Rodrigues: The mechanics of cell fate determination in petals. Philos Trans R Soc Lond B Biol Sci. 2002, 357, 809-813.

35.  Jin, H., Y. Liu, K.-Y. Yang, C.-Y. Kim, B..Baker, and S. Zhang. Function of a mitogen-activated protein kinase pathway in N gene-mediated resistance in tobacco. The Plant Journal 2003, 33, 719-731.

36.  Liu, Y., H. Jin, K.-Y. Yang , C.-Y. Kim, B. Baker, and S. Zhang: Interaction between two mitogen-activated protein kinases during tobacco defense signaling. The Plant Journal 2003, 34, 149-160.

37.  Jin, H., E. Cominelli, P. Bailey, A. Parr, F. Mehrtens, C. Tonelli, B. Weisshaar, and C. Martin. Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis.  EMBO Journal 2000, 19, 6150-6161.

38.  Meissner, R., H. Jin (co-first author), E. Cominelli, M. Denekamp, et.al.: Function search in a large transcription factor gene family in Arabidopsis: Assessing the potential of reverse genetics to identify insertional mutants in R2R3 MYB genes. Plant Cell 1999, 11, 1827-1840.

39.  Kranzl, H.D., M. Denekamp, R. G., H. Jin, A. Leyva, R. Meissner, K. Petroni, A. Urzainqui,  M.Bevan, C. Martin, S. Smeekens, C. Tonelli, J. Paz-Ares, B. Weisshaar.  Towards functional characterisation of the members of the R2R3- MYB gene family from Arabidopsis thaliana.  The Plant Journal 1998, 16, 263-276.

40.  Jin, H. and C. Martin. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol Biol. 1999, 41, 577-585.

41.  Song, R.-T., J. Li, H. Jin, Q.-Q. Zhang, and Z.-K. Xu. Influence of substrate and ribozyme sequences on the functions of ribozyme.  ACTA Biochimica et Biophysica Sinica 1997, 29, 61-67.

42.  Jin, H., Q.-Q. Zhang, R.-T. Shong, and Z.-K. Xu. Complementary expression of two defective TMV particles in tobacco.  Chinese Journal of Biochemistry and Biophysics 1996, 29(2): 131-139.

43.  Li, J., H. Jin, Q.-Q. Zhang, R.-T. Song, and Z.-K. Xu. Di-component ribozyme can function as two independent ribozymes on tobacco mosaic virus RNA. Chinese Journal of Biotechnology 1995, 11, 20-26. 

44.  Jin, H., H.-S. Shang, Q.-Q. Zhang, and Z.K. Xu. Cloning and expression of an antifreeze peptide gene of Winter Flounder in E.coli.  ACTA Biologiae Experimentalis Sinica 1995, 28, 77-83.

*: Corresponding author

 

Book Edited:

      1.   RNA Abundance Analysis, a new volume for the "Methods in Molecular Biology"      

            book series, published by Humana Press, USA. 2012. Co-editors, Hailing Jin & Walter Gassmann.

       Book Editing:

      1.    Nuclear function and Epigenetics in plants.

 

Book Chapters:

1.    Yifan Lii and Hailing Jin*: Forward Chemical Screening of Small RNA Pathways. Plant Chemical Biology, Methods in Molecular Biology. Accepted.

2.    Hongwei Zhao, Yifan Lii, Pei Zhu, and Hailing Jin*: Isolation and Profiling of Protein-Associated Small RNAs. RNA Abundance Analysis, a new volume for the "Methods in Molecular Biology", 2012.

3.    Chellappan Padmanabhan and Hailing Jin*: Host endogenous small RNAs regulate plant innate immunity. Biology of Molecular Plant-Microbe Interactions, Volume 7. 2010.

4.    Padmanabhan Chellappan and Hailing Jin*: Discovery of plant microRNAs and short-interfering RNAs by deep parallel sequencing. Methods in Molecular Biology, 2009, 495, 121-132.

5.    Surekha Katiyar-Agarwal and Hailing Jin*: Discovery of Pathogen-Regulated Small RNAs in Plants. Methods in Enzymology, 2007, 427, 215-227.

6.    Hailing Jin*: Viral systemic movement and plant vascular development. Biology of Plant-Microbe Interactions, Volume 5. Published by International Society for Molecular-Microbe Interactions. St. Paul, Minnesota, USA. 2006, p423-426.

Manuscript under review:

1. Hongwei Zhao, Ruobai Sun, Ute Albrecht, Chellappan Padmanabhan, Airong Wang, Michael D. Coffey, Thomas Girke, Zonghua Wang, Timothy J Close, Mikeal Roose, Raymond K Yokomi, Svetlana Folimonova, Georgios Vidalakis, Robert Rouse, Kim D. Bowman, and Hailing Jin*:  Small RNA profiling reveals phosphorus deficiency as a contributing factor in symptom expression for citrus Huanglongbing disease. Submitted.

 

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