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1. 期刊论文
1）植物生殖发育的分子机理
Zong J#, Wang L#, Zhu L#, Bian LL, Zhang B, Chen XF, Huang GQ, Zhang XL, Fan JY, Cao LC, Coupland G, Liang WQ, Zhang DB, Yuan Z*. A rice single cell transcriptomic atlas defines the developmental trajectories of rice floret and inflorescence meristems. New Phytologist. 2022, 234(2): 494-512. (*通讯作者)
Li SQ#, Cao LC#, Chen XF, Liu YL, Persson S, Hu JP, Chen MJ, Chen ZB, Zhang DB, Yuan Z*. A synthetic biosensor for mapping dynamic responses and spatio-temporal distribution of jasmonate in rice. Plant Biotechnology Journal. 2021, 19(12): 2392-2394. (*通讯作者)
Cao LC, Tian JQ, Liu YL, Chen XF, Li SQ, Persson S, Lu D, Chen MJ, Luo ZJ, Zhang DB, Yuan Z*. Ectopic expression of OsJAZ6, which interacts with OsJAZ1, alters JA signaling and spikelet development in rice. The Plant Journal. 2021, 108(4): 1083-1096. (*通讯作者)
Sun LL#, Yuan Z#(并列第一), Wang DX, Li J, Shi JB, Hu YY, Yu J, Chen XF, Chen SX, Liang WQ, Zhang DB†. Carbon Starved Anther modulates sugar and ABA metabolism to protect rice seed germination and seedling fitness. Plant Physiology. 2021, 187(4):2405-2418.
Hu Y, Wang L Jia R, Liang WQ, Zhang XL, Xu J, Chen XF, Lu D, Chen MJ, Luo ZJ, Xie JY, Cao LM, Xu B, Yu Y, Persson S, Zhang DB, Yuan Z*. Rice transcription factor MADS32 regulates floral patterning through interactions with multiple floral homeotic genes. J Exp Bot. 2021, 72(7):2434-2449. (*通讯作者)
Yuan Z*, Persson S, Zhang DB. Molecular and genetic tools to change spikelet development and grain yield. aBIOTECH. 2020, 1: 276-292. (*通讯作者)
Tian JQ, Cao LC, Chen XF, Chen MJ, Zhang P, Cao LM, Persson S, Zhang DB, Yuan Z*. The OsJAZ1 degron modulates jasmonate signaling sensitivity during rice development. Development. 2019, 146: dev173419. (*通讯作者)
Yang J, Yuan Z, Meng Q, Huang G, Périn C, Bureau C, Meunier AC, Ingouff M, Bennett M, Ao P, Liang WQ*, Zhang DB*. Dynamic regulation of auxin response during rice development revealed by newly established hormone biosensor markers. Front Plant Sci. 2017, 8, 256.
Ferguson AC, Pearce S, Band LR, Yang C, Ferjentsikova I, King J, Yuan Z, Zhang D, Wilson ZA. Biphasic regulation of the transcription factor ABORTED MICROSPORES (AMS) is essential for tapetum and pollen development in Arabidopsis. New Phytol. 2017, 213(2): 778-790.
Yuan Z, Zhang DB*. Roles of jasmonate signalling in plant inflorescence and flower development. Current Opinion in Plant Biology, 2015, 27: 44-51.
Hu Y, Liang WQ, Yin CS, Yang XL, Ping BZ, Li AX, Jia R, Chen MJ, Luo ZJ, Cai Q, Zhao XX, Zhang DB, Yuan Z*. Interactions of OsMADS1 with floral homeotic genes in rice flower development. Molecular Plant, 2015, 8(9): 1366-1384. (*通讯作者)
Wang H, Zhang L, Cai Q, Hu Y, Jin Z, Zhao X, Fan W, Huang Q, Luo Z, Chen M, Zhang D, Yuan Z*. OsMADS32 interacts with B-function proteins and regulates rice flower development. Journal of Integrative Plant Biology, 2015. 57(5):504-513. (*通讯作者)
Cai Q*, Yuan Z* (并列第一), Chen MJ, Yin CS, Luo ZJ, Zhao XX, Liang WQ, Hu JP and Zhang DB. Jasmonic Acid Regulates Spikelet Development in Rice. Nature Communications. 2014, 5: 3476.
Zhang DB, Yuan Z. Molecular Control of Grass Inflorescence Development. Annual Review of Plant Biology. 2014, 65. 49-55.
Li H*, Yuan Z* (并列第一), Vizcay-Barrena G, Yang C, Liang W, Zong J, Wilson ZA, Zhang DB. PERSISTENT TAPETAL CELL 1 (PTC1) Encodes a PHD-Finger Protein That Is Required for Tapetal Cell Death and Pollen Development in Rice. Plant Physiology, 2011, 56 (2), 615-630.
Xu J, Yang C, Yuan Z, Zhang DS, Gondwe MY, Ding ZW, Liang WQ, Wilson Z and Zhang DB. (2010) The ABORTED MICROSPORES Regulatory Network Is Required for Postmeiotic Male Reproductive Development in Arabidopsis thaliana. The Plant Cell. 22(1): 91–107.
Yuan Z, Gao S, Xue DW, Luo D, Li LT, Ding SY, Yao X, Wilson Z, Qian Q and Zhang DB. (2009) RETARDED PALEA1 (REP1) Controls Palea Development and Floral Zygomorphy in Rice. Plant Physiology, 149(1): 235–244.
Zhang DS, Liang WQ, Yuan Z, Li N, Shi J, Wang J, Liu YM, Yu WJ, Zhang DB. Tapetum Degeneration Retardation is critical for rice pollen wall development. Molecular Plant, 2008, 1(4):599-610.
刘宜林，范均怡，陈晓菲，徐淑月，张大兵，袁政*。OsAP2-4调控水稻分蘖功能的初步研究。植物生理学报，2022, 58(5): 817-824。(*通讯作者)
范均怡，陈晓菲，林参，沈舟远，张大兵，袁政*。euAP2类转录因子在水稻花器官发育中功能的初步研究。植物生理学报，2020, 56(5): 939-948。(*通讯作者，封面论文)
吴迪，袁政*，张大兵*。水稻小穗器官发生分子调控机制的研究进展。生命科学，2018, 30(11): 1173-1183。(*并列通讯作者)
鲁丹，王丽，宋凡，陶菊红，张大兵，袁政*。水稻 OsJMJ718 基因可选择性多聚腺苷酸化序列的克隆及生殖发育期表达模式分析。植物学报，2018，53 (5):594-602。(*通讯作者)
宋凡, 李全林, 鲁丹, 王丽, 袁政*。利用CRISPR-Cas9系统进行水稻OsMADS15基因定向编辑的研究。植物生理学报，2017, 53 (6): 969-978。(*通讯作者)
于燕杰，张大兵，袁政*。WOX蛋白家族调控干细胞发育分子机制的研究进展。植物学报，2016，51(4)：565-574。(*通讯作者)
沈卫平，蔡强，周锋利，张建中，张大兵，袁政*。植物激素调控水稻花器官发育分子机制的研究进展。植物生理学报，2015, 51(5): 593-600。（*通讯作者）
王环环，蔡强，陈明姣，罗治靖，张大兵，袁政*。水稻花器官突变体apl (abnormal palea and lodicules)的表型分析与基因初定位。植物学报，2014，49(1)：1-7。（*通讯作者，封面论文）
2）水稻分子辅助育种
Li XQ, Li R, Yuan Z, Zhu ZB, Xu WT, Wang YJ, Zhang DB, and Yang LT*. One versatile Cas9-integrated single-tube duplex quantitative real-time PCR system for rapid analysis of CRISPR/Cas-induced mutants. Anal Chem. 2022, 94(30): 10832-10840
Biswas S, Tian JQ, Li R, Chen XF, Luo ZJ, Chen MJ, Zhao XX, Zhang DB, Persson S, Yuan Z*, Shi JX*. Investigation of CRISPR/Cas9-induced SD1 rice mutants highlights the importance of molecular characterization in plant molecular breeding. J Genet Genomics, 2020, 47(5): 273-280. (*并列通讯作者).
Fan W, Zong J, Luo ZJ, Chen MJ, Zhao XX, Zhang DB, Qi YP, Yuan Z*. Development of a RAD-seq based DNA polymorphism identification software, AgroMarker Finder, and its application in rice marker-assisted breeding. PLOS ONE, 2016, 11(1):e01471087. (*通讯作者)
Lü Y, Cui X, Li R, Huang P, Zong J, Yao D, Li G, Zhang D, Yuan Z*. Development of genome-wide insertion/deletion markers in rice based on graphic pipeline platform. Journal of Integrative Plant Biology, 2015, 8(9): 1366–1384. (*通讯作者)
李全林，王义发，韩晴，袁政*，沈雪芳*。糯玉米‘沪五彩花糯1号’品系特异性2b-RAD分子标记的开发及应用。植物生理学报，2016, 52(5): 669-677。(*通讯作者)
顾伟航，田佳琪，朱明超，文正怀，严卫古，王兴龙，张大兵，袁政*。利用分子标记对‘淮稻5号’进行品种真实性鉴定。植物生理学报，2018, 54 (2): 265-272。(*通讯作者)
罗治靖，沈卫平，陈明姣，梁婉琪，陆建中，张建中，刘康，张大兵，袁政*。粳稻淡黄色叶雄性不育系金汇A的选育。杂交水稻，2013，160(03)：15-17。（*通讯作者）
李凌，田麟，王涛涛，蒋其根，罗治靖，陈明姣，张建中，张大兵，袁政*。优质稻米‘青香软粳’低直链淀粉含量形成分子机制的初步研究。植物生理学报，2012，48(2)：147-155。（*通讯作者，封面文章）
3）其他方向
Sun Y, Yang Y, Yuan Z, Müller JL, Chen Yu, Yanfei Xu, Xinghua Shao, Xiaofang Li, Eva L. Decker, Ralf Reski, Hai Huang. (2010) Overexpression of the Arabidopsis gene UPRIGHT ROSETTE reveals a homeostatic control for indole-3-acetic acid (IAA). Plant Physiology, 153(3): 1311-1320.
Yuan Z, Yao X, Zhang DB, Sun Y and Huang H. (2007) Genome-wide expression profiling in seedlings of the Arabidopsis mutant uro that is defective in the secondary cell wall formation. Journal of Integrative Plant Biology, 49(12): 1754-1762. (封面文章)
Xiao DX, Yuan Z*. (2006) Embryogenesis and seed development in Sinomanglietia glauca. J of Plant Res, 119:163-166. (*通讯作者)
Chen MJ*, Yuan Z* (并列第一), Huang H. (2006) DELAYED FLOWERING, an Arabidopsis gene that acts in the autonomous flowering promotion pathway and is required for normal development. Journal of Integrative Plant Biology, 48(1): 27-34.
Guo YL*, Yuan Z *(并列第一), Sun Y, Liu J and Huang H. (2004) Characterizations of an Arabidopsis mutant, upright rosette, reveal that the UPRIGHT ROSETTE gene is involved in auxin action in plant development. Journal of Integrative Plant Biology, 46: 846-853. (封面文章)
靳振明，平宝哲，沈浩珺，杜淮清，李瑞乾，朱璐，张大兵，袁政*。水稻脆秆突变体bc-s1的表型分析和基因定位。植物学报，2016，51(2)：167-174。(*通讯作者)
2. 会议报告
A single-cell RNA sequencing defines the developmental trajectories of rice floret and inflorescence meristems, 2022.7.14-7.15, 第4届单细胞多组学峰会，湖北武汉。
茉莉素调控水稻小穗发育的分子机制，2021.8.25-8.26，2021夏季青年科学家快闪论坛——植物生物技术专场。
Roles of jasmonate signalling in regulating rice reproductive development, 2021.7.5-7.9, The International Symposium on Plant Reproductive Development, 上海交通大学。
A synthetic biosensor for mapping the dynamic response and spatio-temporal distribution of jasmonate in rice，2021.6.25-27，2021植物细胞与发育生物学国际会议，四川绵阳。
Role of Jasmonate in Rice Reproductive Development, 2019.6.26-29, 第一届中国—非洲经贸博览会——2019（长沙）国际稻作发展论坛暨中非稻作发展研讨会, 湖南，长沙。
Development of New Breeding Lines by Application of CRISPR-Cas9 in Rice, 2019.7.18-20, Net4FS Dissemination Event, SUSTAINABILITY OF AGRICULTURE: FEEDING A HUNGRY PLANET, Shanghai.
Rice Spikelet Development is regulated by a Series of Repressive Pathways, 2019.7.22-26, The International Symposium on Plant Reproductive Development, shanghai.
Role of jasmonate in rice reproductive development, 2018.10.29-10.30, Workshop on Plant Cell and Developmental Biology. Shanghai, China.
抑制蛋白OsJAZ1调控茉莉素信号传递分子机制的研究，2018.11.20，江西省植物生理学会年会，江西萍乡；
育种技术的研究进展与机遇，2018.3.21，上海市种子行业协会年会，上海；
基因编辑技术研究进展及在农作物育种中的应用，2018.12.18，江苏徐淮地区淮阴农业科学研究所，淮安。
Development of new male sterile lines by using CRISPR/Cas9 in rice, 2017.11.11, Sino-Australian Symposium on Modern Agriculture and Enviromental Protection, Huaian, Shanghai.
Genetic and molecular mechanism of OsMADS32 in rice flower development (poster), 2017.9.3-9.7, Workshop on Molecular Mechanisms Controlling Flower Development, Padua, Italy.
水稻育种技术创新的探讨，2017.4.24，淮安；
Application of CRISP/Cas9 system in rice functional genomics research, 2017.4.18-19, Genome Editing: Technologies and Applications in Crops, Wuhan, China;
Floral organ specification in rice, 2017.7.3-7, The 5th International Symposium on Plant Reproductive Development, Shanghai, China.
用于育种和农业集约化生产的作物表型分析技术的创新研究，2017.1.8，上海市种子行业协会年会 专题报告，上海；
Rice Flower Development and Inflorescence Phenotyping, 2016.3.14-18, Global Innovation Initiative (GII) network, Stanford, USA.
2b-RAD Sequencing for Plant Variety Identification, 2016.7.6, Decathlon Training Seminar and Stakeholder Workshop, Shanghai, China.
Development of japonica Photo-Sensitive Genic Male Sterile Rice Lines by Editing Carbon Starved Anther Using CRISPR/Cas9, 2016.8.14-19, 7th International Crop Science Congress (7th ICSC), Beijing, China.
Development of new environmental sensitive genic male sterile rice lines by using CRISPR/Cas, 2016.11.7-10, NET4FS: AN INTERDISCIPLINARY TRAINING NETWORK TO ADDRESS KEY QUESTIONS IN PLANT DEVELOPMENT FOR FOOD SECURITY, Shanghai, China.
RAD Sequencing of Tobacco, 2016.11.21-24, Decathlon Final Meeting, Wageningen University, Netherlands.
Cereal Reproduction and Molecular Breeding, 2016.12.12-14, Workshop between SJTU and University of Adelaide on Agriculture and Health, Shanghai, China.
Rice flower development--An updated understanding. The 21st Conference of the International Plant Growth Substances Association (IPGSA Conference 2013), 2013.6.18-21. Shanghai.
水稻分子标记辅助育种的现状与展望，上海种业发展论坛和新优品种展示会，2013.10.18，上海；
3. 专著
Gu WH, Zhang DB, Qi YP, Yuan Z*. Generating Photoperiod-Sensitive Genic Male Sterile Rice Lines with CRISPR/Cas9, in Plant Genome Editing with CRISPR Systems: Methods and Protocols, Y. Qi, Editor. 2019, Springer New York: New York, NY. p. 97-107. (*通讯作者)
Zhang DB, Yuan Z, An G, Dreni L, Hu JP, Kater MM. in Panicle Development, in Genetics and Genomics of Rice, Q. Zhang and R.A. Wing, Editors. 2013, Springer New York. p. 279-295.
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